Projects
Some open source projects I have worked on:
- fastq-fix-i5 (2026)
- A fast, streaming tool to rewrite FASTQ headers by reverse-complementing the i5 (Index2 / P5) barcode
- Source code
rustbioconda
- MONDEY (2024-2025)
- MONDEY :: Milestones of Normal Development in Early Years
- Source code
TypescriptPythonsvelteFastAPItailwinddocker
- predicTCR (2024-2025)
- Website and distributed runner architecture for DNA sequence machine learning model.
- Source code
TypescriptPythonvue.jsFlaskdocker
- Visuomotor Serial Targeting Task (VSTT) (2022-2023)
- GUI tool to create, run and analyse motor skill acquisition experiments
- Source code
PythonPyQtpsychopy
- SampleFlow (2022-2023)
- Website and REST API to manage DNA sequencing samples and results
- Source code
TypescriptPythonvue.jsFlaskdocker
- IWR Interactive Visualization (2022)
- Interactive visualization of IWR research activities
- Source code
TypeScriptsvg.jsnpm
- pybind11-numpy-example (2021)
- Simple example of pybind11/numpy including CI to build wheels and deploy to PyPI
- Source code
c++11pybind11CMakeCatch2
- sme-contrib (2021)
- Parameter fitting and plotting functionality for Spatial Model Editor
- Source code
Python
- Hammingdist (2020-2024)
- Fast SIMD/CUDA hamming distance implementation with a Python interface
- Source code
c++17CUDASIMDpybind11
- Spatial Model Editor (2019-2026)
- GUI tool to create and simulate spatial models of bio-chemical reactions
- Source code
c++20Qt6nanobindVTKoneTBB
- Spatial Model Editor Website (2019-2025)
- Simple static website with content generated from yaml
- Source code
PugJavaScriptBootstrapnpm
- blockCG (2018)
- Reference C++ implementation of SBCGrQ and other block CG solvers from 1808.01829
- Source code
c++11EigenCMakeCatch2
- This website (2017-2026)
- Simple static website with content generated from yaml and markdown
- Source code
JekyllyamlCSS
- openQCD-input-file-editor (2015)
- GUI tool to edit and validate openQCD simulation code input files
- Source code
PythonPyQt
