Projects
Here are some of the open-source projects that I have worked on.
fastq-fix-i5
A fast, streaming tool to rewrite FASTQ headers by reverse-complementing the i5 (Index2 / P5) barcode
MONDEY
MONDEY :: Milestones of Normal Development in Early Years
Spatial Model Editor
GUI tool to create and simulate spatial models of bio-chemical reactions
Spatial Model Editor Website
Simple static website with content generated from yaml
This website
Simple static website with content generated from yaml and markdown
predicTCR
Website and distributed runner architecture for DNA sequence machine learning model.
Hammingdist
Fast SIMD/CUDA hamming distance implementation with a Python interface
Visuomotor Serial Targeting Task (VSTT)
GUI tool to create, run and analyse motor skill acquisition experiments
SampleFlow
Website and REST API to manage DNA sequencing samples and results
IWR Interactive Visualization
Interactive visualization of IWR research activities
pybind11-numpy-example
Simple example of pybind11/numpy including CI to build wheels and deploy to PyPI
sme-contrib
Parameter fitting and plotting functionality for Spatial Model Editor
blockCG
Reference C++ implementation of SBCGrQ and other block CG solvers from 1808.01829
openQCD-input-file-editor
GUI tool to edit and validate openQCD simulation code input files