Open source contributions

Various contributions including adding SBML support to the parser, maintaining the JIT llvm code, and migrating to the new llvm pass manager.

Fix an error when calling .shape on the indices of a NeuronMonitor

Extend pykdtree to support huge point clouds.

Add gaussian broadening to slit source in the mcx GPU ray-tracer.

Various fixes for math parsing and expression evaluation as well as fixing memory leaks.

Fix an issue where the reveal.js slides generated by nbconvert were not visible.

Update tbb use in flexbar to onetbb to allow it to build with the current conda-forge tbb version.

Fix openssl issue in the packaging of HTSlib on bioconda.

Fixes to improve support on Windows for msys2 and mingw.

Improved the rendering performance in PsychoPy.

I spent a day tracking down the cause of a segfault in symengine where the fix ended up being this one-line commit to llvm.

Added macOS and windows jobs to the CI.

Fix an incorrect warning when parsing test executable return code.